PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12273A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 188aa    MW: 20041.4 Da    PI: 6.4017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12273AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY52.31.1e-161291672159
                                -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                + sYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+
  Oropetium_20150105_12273A 129 SWSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHT 167
                                569***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.35E-12129167IPR003657WRKY domain
PfamPF031065.5E-11130166IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-15130167IPR003657WRKY domain
SMARTSM007745.9E-8131168IPR003657WRKY domain
PROSITE profilePS5081115.032131166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEGSSQLEAC FPSLYGLSRR PCAAAPPPRH LAPLPNENKL LQMPLVQEQT ENNHGVMLSS  60
YHDNHGDLYP LLLPGIPFCP TSAAACDKPT GFAPPLDAVE AGTSAVKAGG EMAASNITAA  120
ATTCHGSASW SYYRCTHSNC RVKKRVERLS EDCRMVITTY EGRHTHTPCS DDADGTDHTG  180
SCAFTSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12273A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654328e-61EU665432.1 Triticum aestivum WRKY3 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155480.12e-65probable WRKY transcription factor 12
TrEMBLA0A287IZ531e-65A0A287IZ53_HORVV; Uncharacterized protein
STRINGTraes_2AL_B1270662B.12e-66(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.11e-22WRKY family protein