PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12553A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TCP
Protein Properties Length: 404aa    MW: 43235.3 Da    PI: 6.8421
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12553AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.11.5e-3497210189
                        TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                                aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai el++ + ++a ++ ea+++  +++
  Oropetium_20150105_12553A  97 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEELPDRPEEAAAAAaEAAAEATTEQ 180
                                689**************************************************************6666533332222222222 PP

                        TCP  84 nsssg........................k 89 
                                  s +                         
  Oropetium_20150105_12553A 181 VTSTSsygfgnpitgvagsfaqhsvgadgG 210
                                111112335555555555555444555541 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3299221IPR005333Transcription factor, TCP
PROSITE profilePS5136932.615100158IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEEDKNQLSK GLDPWSNNNP TATTTSTLHY LLQEKERAQA QEQLHQIYHQ QQAGFGYLQH  60
HRRQSRGGDG GVSSGESTPV DALTTTAFGS GRIVRSAAGR KDRHSKVCTA RGLRDRRVRL  120
AAHTAIRFYD VQDRLGYDRP SKAVDWLIRN AKAAIEELPD RPEEAAAAAA EAAAEATTEQ  180
VTSTSSYGFG NPITGVAGSF AQHSVGADGG VSGGNVKSLF PSSSTASTAP AHDEYRGSPP  240
DLLSRTTSSQ PRELCLTLQS NNRHHQMFSH GMISSAGVPG WPAEHNQRIM PSWHASENSS  300
GDSRNEDSYM FGMQPARQGL DHQSQLFSQG EPLQSSGGWA SARAWLDPLA AIHQPSSALA  360
GGQVGFSQLV SAGGAGFMGF LAPSAAQRLQ GEEEQGSEAM RRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-19105159155Putative transcription factor PCF6
5zkt_B1e-19105159155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12553A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815346.10.0transcription factor PCF7-like
SwissprotQ8LT051e-148PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A2T8IK720.0A0A2T8IK72_9POAL; Uncharacterized protein
STRINGPavir.J07136.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-33TCP family protein