PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_12661A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 221aa MW: 23066.3 Da PI: 7.061

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_12661A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.7	6.9e-37	32	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrr+C+++Cv+ap+f +++++fa+vhk+FGasnv k+l+++p r+d++ +++yeA+ar+ dPvyG+vg Oropetium_20150105_12661A 32 PCGACKFLRRRCVPGCVFAPHFgagsggGGASAAQFAAVHKVFGASNVAKMLSRVPAALRRDVAGTVCYEAQARIADPVYGCVG 115 7*******************55444433667*********************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +il+lq+q++ ++ael+++++e Oropetium_20150105_12661A 116 TILALQHQVALVQAELSTVQTE 137 ****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.224	31	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-40	32	135	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MSRAIQPPGK LAGAEPAADA QPEEGPAGPG APCGACKFLR RRCVPGCVFA PHFGAGSGGG 60 GASAAQFAAV HKVFGASNVA KMLSRVPAAL RRDVAGTVCY EAQARIADPV YGCVGTILAL 120 QHQVALVQAE LSTVQTELLN RRLALATVLP SLHAASSPTS QMVNNCGALP PQTVDYIDID 180 PSLRGLPHPL LPSQHERRLE EEEGRSQIMV ESWENRNSCD *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	28	139	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	28	139	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_12661A

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT086412	1e-108	BT086412.1 Zea mays full-length cDNA clone ZM_BFc0163O13 mRNA, complete cds.
GenBank	KJ727726	1e-108	KJ727726.1 Zea mays clone pUT5666 LOB transcription factor (LOB11) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815329.1	2e-77	LOB domain-containing protein 20-like
Swissprot	Q9SRV3	2e-49	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	A0A2S3HRB5	6e-76	A0A2S3HRB5_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DG51	5e-76	A0A2T7DG51_9POAL; Uncharacterized protein
STRING	Si004290m	3e-76	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14085	25	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	2e-39	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_12661A