PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_12827A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

WOX

Protein Properties

Length: 206aa MW: 23872.3 Da PI: 8.6352

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_12827A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.1	2e-20	11	72	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L elF+ r+ps+e++++++++l +++ ++V++WFqN++a+e++ Oropetium_20150105_12827A 11 KCGRWNPTAEQVKVLSELFRAgLRTPSTEQIQRISNHLsafgKVESKNVFYWFQNHKARERH 72 568***************99************************************95 PP
2	Wus_type_Homeobox	110.1	1.2e-35	12	73	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + RW+Pt+eQ+k+L el+++GlrtP++e+iqri+++L+++Gk+e+kNVfyWFQN+kaRer++ Oropetium_20150105_12827A 12 CGRWNPTAEQVKVLSELFRAGLRTPSTEQIQRISNHLSAFGKVESKNVFYWFQNHKARERHH 73 78**********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	6.5E-4	10	77	IPR001356	Homeobox domain
Pfam	PF00046	8.0E-18	12	72	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.58E-11	13	76	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-7	14	71	IPR009057	Homeodomain-like
CDD	cd00086	0.00205	14	70	No hit	No description
PROSITE profile	PS50071	10.317	18	73	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0010078	Biological Process	maintenance of root meristem identity
GO:1902459	Biological Process	positive regulation of stem cell population maintenance
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MEALSGRVGV KCGRWNPTAE QVKVLSELFR AGLRTPSTEQ IQRISNHLSA FGKVESKNVF 60 YWFQNHKARE RHHHKKRRRX XXXXXXXXXS NEDEGRAAAS HDAEVDLVLQ PPESKREARS 120 YSHHHSRLMT CYVREVEQQE AFWERPAREV ETLELFPLKS YDLEAEKQIR YVRSAGEQCR 180 EFSFFDVGAG RDPPLELRLC SFGGL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269\|PubMed:12904206}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_12827A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642985.1	1e-116	WUSCHEL-related homeobox 9
Swissprot	Q8W0F1	1e-117	WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBL	A0A0D3EWE2	1e-114	A0A0D3EWE2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0N550	1e-114	A0A0E0N550_ORYRU; Uncharacterized protein
TrEMBL	A0A3Q8APT2	1e-114	A0A3Q8APT2_ORYSA; Transcriptional regulator WOX
TrEMBL	A2WX37	1e-114	A2WX37_ORYSI; Uncharacterized protein
TrEMBL	I1NTF8	1e-114	I1NTF8_ORYGL; Uncharacterized protein
STRING	ORUFI01G41010.1	1e-115	(Oryza rufipogon)
STRING	OS01T0854500-01	1e-115	(Oryza sativa)
STRING	ORGLA01G0314800.1	1e-115	(Oryza glaberrima)
STRING	OBART01G37660.1	1e-115	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9411	36	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11260.1	1e-33	WUSCHEL related homeobox 5

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_12827A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Li S, et al. OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development. New Phytol., 2014. 201(1): p. 66-79 [PMID:24020752] Chu H, et al. A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J. Exp. Bot., 2013. 64(17): p. 5359-69 [PMID:24043854] Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Coudert Y, et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol., 2015. 206(1): p. 243-54 [PMID:25442012]