PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_12880A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 237aa MW: 25969.9 Da PI: 4.7579

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_12880A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.9	5.4e-42	6	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka..eekewyfFskrdkkyatgkrknra 77 ppG+rF Pt+eel+++yL++k++g ++++e+vi+ v++y+v+P++L + + + w++F++r++++a+g r++r+ Oropetium_20150105_12880A 6 PPGYRFYPTEEELICFYLRNKLDGLRNDIERVIPVVEVYSVDPRQLSEihdsrlG--GggYGEPWFYFCPRQEREARGGRPSRT 87 8**************************99***********854555332..2334569**************** PP NAM 78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 t sgyWka g+ +v+s+ +++++g+kkt+vfy grap+g+kt+W m+eyrl Oropetium_20150105_12880A 88 TPSGYWKAAGTPGPVYSAgDRRAIGMKKTMVFYLGRAPSGTKTQWKMNEYRL 139 *************977888*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-46	3	144	IPR003441	NAC domain
PROSITE profile	PS51005	42.912	5	165	IPR003441	NAC domain
Pfam	PF02365	1.8E-24	6	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MANGRPPGYR FYPTEEELIC FYLRNKLDGL RNDIERVIPV VEVYSVDPRQ LSEIHDSRLG 60 GGGYGEPWFY FCPRQEREAR GGRPSRTTPS GYWKAAGTPG PVYSAGDRRA IGMKKTMVFY 120 LGRAPSGTKT QWKMNEYRLL QYDDAAAAAG ASSAAEERIQ SFDRRPLAGV AMVGTGEDPG 180 EDPGPSTAAM ASPDDNNGAS GSLQQQMRLM ERGGSDPYYG EDVMGALDDL LYWPSD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-30	6	141	18	144	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-30	6	141	18	144	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-30	6	141	18	144	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-30	6	141	18	144	NO APICAL MERISTEM PROTEIN
3swm_A	9e-30	6	141	21	147	NAC domain-containing protein 19
3swm_B	9e-30	6	141	21	147	NAC domain-containing protein 19
3swm_C	9e-30	6	141	21	147	NAC domain-containing protein 19
3swm_D	9e-30	6	141	21	147	NAC domain-containing protein 19
3swp_A	9e-30	6	141	21	147	NAC domain-containing protein 19
3swp_B	9e-30	6	141	21	147	NAC domain-containing protein 19
3swp_C	9e-30	6	141	21	147	NAC domain-containing protein 19
3swp_D	9e-30	6	141	21	147	NAC domain-containing protein 19
4dul_A	7e-30	6	141	18	144	NAC domain-containing protein 19
4dul_B	7e-30	6	141	18	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_12880A

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	1e-131	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818071.1	1e-100	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-53	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A3L6RLX7	1e-100	A0A3L6RLX7_PANMI; NAC domain-containing protein 90-like
STRING	Si002586m	6e-97	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-55	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_12880A

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]