PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_12881A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 183aa    MW: 20563.1 Da    PI: 6.9223
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_12881AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-07115136324
                                SS-HHHHHHHHHHHHHTTTT-H CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtW 24 
                                +WT+eE+ l++++ +++G g+W
  Oropetium_20150105_12881A 115 PWTEEEHRLFLQGLERYGRGDW 136
                                8********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0262072IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-52168IPR009057Homeodomain-like
SuperFamilySSF466891.87E-102274IPR009057Homeodomain-like
PROSITE profilePS500906.2372370IPR017877Myb-like domain
SuperFamilySSF466893.59E-10109163IPR009057Homeodomain-like
SMARTSM007174.2112162IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.7E-11112163IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.6E-5114137IPR009057Homeodomain-like
CDDcd001673.63E-5115136No hitNo description
PROSITE profilePS500905.75115164IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDFHHHHHYQ AAAAAAAGTT GRPWSKAEDK VFESALVLWP EHTPDRWAMV AAQLHGRTPQ  60
EAWEHYEALV ADVDLIERGA VDVPGCWDAG DAEESRRGNS AGRGRGVVSR RPGVPWTEEE  120
HRLFLQGLER YGRGDWXXXX XXXXXXXXXX XVASHAQKFF TRQLNPASRD SKRKSIHDIT  180
TP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-181590277RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_12881A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794364e-75HF679436.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB30 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314751.19e-76uncharacterized protein LOC103650973
RefseqXP_002456680.12e-75transcription factor DIVARICATA
RefseqXP_020405618.19e-76uncharacterized protein LOC103650973 isoform X1
TrEMBLA0A1D6N6K12e-74A0A1D6N6K1_MAIZE; Duplicated homeodomain-like superfamily protein
TrEMBLA0A3L6FPY82e-74A0A3L6FPY8_MAIZE; Transcription factor DIVARICATA
STRINGSb03g040730.18e-75(Sorghum bicolor)
STRINGGRMZM2G027914_P013e-75(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-37MYB family protein