PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13001A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24419.4 Da    PI: 7.2561
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13001AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.85e-22943135
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35
                               krien++nrqvtfskRrng+lKKA E+SvLCdaev
  Oropetium_20150105_13001A  9 KRIENSTNRQVTFSKRRNGLLKKAREISVLCDAEV 43
                               79********************************9 PP
2K-box68.62.1e-2371167197
                      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                                yq++sgk l+++k++ l+ e++++kke++n+q e+Rhl+GedL+sL+ keL  +e++L+++l++  +k +e++ + + + +  e
  Oropetium_20150105_13001A  71 YQTNSGKILWDEKHKILSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTNLNEKLMEHWERCMTHHKILE 154
                                89999999************************************************************************9999 PP

                      K-box  85 kelqeenkaLrkk 97 
                                +e++    + +++
  Oropetium_20150105_13001A 155 DENKLLAFKVHQQ 167
                                9999888777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.754161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-27160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-25296IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-21323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-181043IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-213859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-1482164IPR002487Transcription factor, K-box
PROSITE profilePS5129712.30484170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGLLK KAREISVLCD AEVXXXXXXX XXXXXXXCSP  60
KTSLSRILEK YQTNSGKILW DEKHKILSAE IDRIKKENDN MQIELRHLKG EDLNSLQPKE  120
LIMIEEALDN GLTNLNEKLM EHWERCMTHH KILEDENKLL AFKVHQQDIA LSGSMRELEL  180
GYHGDRDFEA QMPITFRVQP SHPNLQENN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13001A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2929590.0AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene).
GenBankBT0648490.0BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970811.11e-128MADS-box transcription factor 2
SwissprotQ407021e-127MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLK3XM061e-127K3XM06_SETIT; Uncharacterized protein
STRINGSi002929m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.19e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]