PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13123A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARR-B
Protein Properties Length: 584aa    MW: 65155.1 Da    PI: 4.9889
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13123AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.78.5e-26195248155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Oropetium_20150105_13123A 195 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 248
                                68*******************.9*******************************8 PP
2Response_reg80.94.1e-27151231109
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                vl+vdD+p+ +++l+++l+k  y ev+++  ++ ale+l+e++  +D+++ D++mp+mdG++ll++i  e  +lp+i+++  ge
  Oropetium_20150105_13123A  15 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARVALEILRERRnkFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGE 96 
                                89*********************.***************888888**********************6654.8*********** PP

                                HHHHHHHHHTTESEEEESS--HHHHHH CS
               Response_reg  83 eedalealkaGakdflsKpfdpeelvk 109
                                 + + + ++ Ga d+l Kp+ ++el++
  Oropetium_20150105_13123A  97 TSRVMKGVQHGACDYLLKPVRMKELRN 123
                                ************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.7E-1642578IPR017053Response regulator B-type, plant
SuperFamilySSF521723.98E-3512136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.4E-4412146No hitNo description
SMARTSM004487.5E-3213125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.74414129IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-2415124IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.79E-2816128No hitNo description
SuperFamilySSF466893.49E-18192252IPR009057Homeodomain-like
PROSITE profilePS512949.161192251IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-28194253IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-22195248IPR006447Myb domain, plants
PfamPF002499.1E-8197247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MALADATAFP YGLRVLVVDD DPTWLKILEK MLRKCSYEVT TCGLARVALE ILRERRNKFD  60
IVISDVNMPD MDGFKLLEHI GLEMDLPVIM MSIDGETSRV MKGVQHGACD YLLKPVRMKE  120
LRNIWQHVYR KKMHEVKEIE GHDSFDDIQM LRNGCEGLED RGMFMRAESD TMRKRKDMDK  180
DHADQELSDC NTVKKARVVW SVDLHQKFVN AVNQIGFDKV GPKKILDLMN VPGLTRENVA  240
SHLQKYRLYL SRLQKQNEER IMGATRQDFS HKGPSDNLNL RSSFQEQPGN VANGYQQGSL  300
KIQAQANMLD SHLEDAKVVV PLQVADKNTA PVSDATNSQN VNGASPLGGV LSFERMPLNQ  360
DRKPSETLIL DCQSWRGNAT PKQFMQYPKH NHERCDLLGD YSCLPKPDLE HPIAPAGHLY  420
APPPIISVSC SMDGDVRDSS DVKPGLLGCM KSLSPALNCT VDSVSVQLSD SVTSPDGDLK  480
FSSLQGLPSI KDCYFDQTKN QATLLTSEEA SVIGGTDLAC LPDDLLGYQL QGVSLENIGL  540
NSIDLFQYSD AMILPGLQNN WYDDLEFSGE TTDYQLIDGC LFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17194253463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13123A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817738.10.0two-component response regulator ORR26
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A3L6SU070.0A0A3L6SU07_PANMI; Two-component response regulator
STRINGSi000815m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-110response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]