PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_13270A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GRF

Protein Properties

Length: 214aa MW: 22879.7 Da PI: 4.9922

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_13270A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.1	3.1e-23	131	175	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r + ++e Oropetium_20150105_13270A 131 EPEPGRCRRTDGKKWRCWRSTIPNEKYCERHMHRGRKRPVQLVVE 175 69************************************9998875 PP
2	QLQ	54.8	3e-19	65	100	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k Oropetium_20150105_13270A 65 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 100 8*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.7E-8	64	100	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.5E-12	65	99	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.922	65	100	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.471	131	175	IPR014977	WRC domain
Pfam	PF08879	7.2E-20	132	170	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MPNQQGADGG GPAGDKDDAA CRDLVLVEDP EAVAVEDPEE AAATAALQEE MKALVASVPD 60 GAGAAFTAMQ LQELEQQSRV YQYMAARVPV PTHLVFPIWK SVTGASSEGA QKYPTLMGLA 120 TLCLDFGKNP EPEPGRCRRT DGKKWRCWRS TIPNEKYCER HMHRGRKRPV QLVVEDDEPD 180 SASGSKTTPG KADDKSASNK KLTVAAPAAV EST*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269\|PubMed:24854713}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_13270A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800926.1	1e-138	growth-regulating factor 11-like
Swissprot	A5HEG9	1e-134	GRF10_MAIZE; GRF-interacting factor 10
TrEMBL	A0A2S3H2A3	1e-137	A0A2S3H2A3_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EVY2	1e-137	A0A2T7EVY2_9POAL; Uncharacterized protein
TrEMBL	A0A3L6QSN3	1e-137	A0A3L6QSN3_PANMI; Growth-regulating factor 11-like
STRING	Si030809m	1e-136	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6735	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-31	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_13270A

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430] Zhang D, et al. GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize. Plant Cell, 2018. 30(2): p. 360-374 [PMID:29437990]