PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13309A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 384aa    MW: 41489.4 Da    PI: 6.0411
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13309AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.32.7e-202066147
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                               k+ie+   rqvtfskRr+g++ KA+ELS+LC+a v v++fs +g++y
  Oropetium_20150105_13309A 20 KKIEDVETRQVTFSKRRQGLFNKAYELSILCGAMVGVVVFSISGRIY 66
                               689*****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-271271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.3571272IPR002100Transcription factor, MADS-box
CDDcd002651.71E-311380No hitNo description
SuperFamilySSF554552.35E-231384IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-191434IPR002100Transcription factor, MADS-box
PfamPF003196.5E-222167IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-193449IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-194970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVKGKKSEPK GKGKAKVELK KIEDVETRQV TFSKRRQGLF NKAYELSILC GAMVGVVVFS  60
ISGRIYSIGH PSIDAVIDRF IPNRNVPATL GSANQADVGV SDTVHQLSAQ YAQLKGLVDR  120
AKQRNKVLKA AIDKEKGGRM MQWLTGNICN LGMGESHEYY KELQAIHHIV LGSVDDAMAG  180
PSQIPISQPQ APAMDASSSQ PHLSVDIASS SQQQYLFGEP SSHHHPLPMD IASLHQLMFD  240
EPSSSQHPPS MGIASSFSQA QRYLFGESSS QPHLSMGIAS SSPQQYLLGE LNSQPYPPVG  300
IAASSQQQYL FGEPSSQSYP PVGIVSSSQQ YEFDNEDVMP TLSFNDVPAS STRGSTDGFE  360
MDDLFAKDDE IHGSGDSGNF PNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13309A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699030.12e-53agamous-like MADS-box protein AGL29
TrEMBLK4A0044e-52K4A004_SETIT; Uncharacterized protein
STRINGSi032189m7e-53(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2226033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-21AGAMOUS-like 29