PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13372A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CAMTA
Protein Properties Length: 213aa    MW: 24850.5 Da    PI: 9.3237
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13372AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1151.61.8e-471102123104
                       CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyY 85 
                                +e  +rw +++ei+aiL+n++k+++  ++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yY
  Oropetium_20150105_13372A 110 SEaASRWFRPNEIYAILANHTKFQVIPQPIDKPVSGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYY 193
                                45599******************************************************************************* PP

                       CG-1  86 ahseenptfqrrcywlLee 104
                                a++e++p+f rrcywlL++
  Oropetium_20150105_13372A 194 ARGEDDPNFFRRCYWLLDK 212
                                *****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF039815.1E-20198IPR021150Ubiquinol-cytochrome c chaperone/UPF0174
PROSITE profilePS5143765.867105212IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-49108212IPR005559CG-1 DNA-binding domain
PfamPF038592.1E-39112212IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MWLVLRRLKE EGKDGVKFGQ YIYEMYNHDV ELRVSKAGVN LLLTKWMKEL EKIFYGNIVK  60
YDAAISPEAR QDELVNVIWR NIYAEEGTEA IDAAATPAVQ ANLNFEKLLS EAASRWFRPN  120
EIYAILANHT KFQVIPQPID KPVSGTVVLY DRKVVRNFRK DGHNWKKKKD GKTVQEAHEK  180
LKIGNEEKVH VYYARGEDDP NFFRRCYWLL DK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13372A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0655611e-111BT065561.1 Zea mays full-length cDNA clone ZM_BFb0287G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957727.12e-65calmodulin-binding transcription activator 6
SwissprotQ7XHR21e-65CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A453BHH94e-69A0A453BHH9_AEGTS; Uncharacterized protein
STRINGPavir.J11066.1.p1e-68(Panicum virgatum)
STRINGSi028862m6e-65(Setaria italica)
STRINGTraes_2BS_1A9DB766A.14e-69(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.14e-48calmodulin binding;transcription regulators