PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_13582A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 227aa MW: 24800.7 Da PI: 5.3932

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_13582A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	5.9e-12	59	102	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR r+N+ + Lr ++P+ +K+sK +L A+++Ik+Lq Oropetium_20150105_13582A 59 LAERRRRGRLNNNILALRAVVPNI-----TKMSKEHTLSDAIDHIKKLQ 102 68*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.227	52	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-17	52	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-14	55	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-9	57	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-13	58	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MPRRPRARSS EEVKEEDFIA SVLNFGDGDG GCDGGGAGDE EDADGQPAAP TGFKSKNLLA 60 ERRRRGRLNN NILALRAVVP NITKMSKEHT LSDAIDHIKK LQNQVQELQR QLDDSPPGEA 120 WEKQGSASSS ESLATTENMQ YQGQVDLVPL GQHKYHLKVF CKKGGVFTKV LQALYSYNAQ 180 VTSLSTITFY GYAESVFSIE VKGEQDVAMV ELRSLLASIV EVPNNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269\|PubMed:16141453, ECO:0000269\|PubMed:20590996}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_13582A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680326.1	1e-119	LOW QUALITY PROTEIN: transcription factor UDT1-like
Swissprot	B9FXT3	1e-81	UDT1_ORYSJ; Transcription factor UDT1
TrEMBL	A0A368Q674	1e-119	A0A368Q674_SETIT; Uncharacterized protein
STRING	Pavir.Ba00709.1.p	1e-119	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11982	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	2e-12	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_13582A

Publications ? help Back to Top
Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996]