PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13681A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 336aa    MW: 36397.3 Da    PI: 7.0737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13681AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09199239954
                                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Oropetium_20150105_13681A 199 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 239
                                699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-15195257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-14196252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-7200239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-7213244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDNITHNNSS SSSSWDLDMS LGSHHHPLLF DSHHHPASAP PPPPPLPFHL SSSSHQHHHP  60
PLHPPPHHHH HHHPSLDPSP SSSLFPPPHH HRLHHLGLDI DPSSHHRHQQ EYGEQPPEHH  120
HEQAEELRPQ EAGGAVGGHE ERAGGGGGGA EDVEEELGAM KEMMYRIAAM QPVDIDPATI  180
KKPRRRNVRI SDDPQSVAAR HRRERISERI RILQRLVPGG TKMDTASMLD EAIRYIKFLK  240
RQVQDLQHQP PQPQQQYPAA AGAGPSTSSL VVGPAGRGPF LPLGPGPLID WAGLVRPVDV  300
HGPTSSSSSS SMGGAHAALG FGFSSASGQS SHGMH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13681A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0650181e-161BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds.
GenBankEU9741971e-161EU974197.1 Zea mays clone 442660 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822758.11e-110transcription factor HEC2-like
TrEMBLA0A1E5US491e-115A0A1E5US49_9POAL; Transcription factor HEC3
STRINGSi015197m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.11e-34bHLH family protein