PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_13834A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 211aa    MW: 23314.3 Da    PI: 6.507
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_13834AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-123287448
                               S-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  4 WTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48
                                T++Ed  lvd++++ Gg+            +  +I+++++ gRt++++k++w+++l
  Oropetium_20150105_13834A 32 CTPDEDIALVDYITRNGGHgnwgrlpklaglNRCAISKELP-GRTDNDIKNHWNSHL 87
                               59******************888888888888888888888.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.17E-92396IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-152491IPR009057Homeodomain-like
PROSITE profilePS5129414.9672491IPR017930Myb domain
SMARTSM007173.2E-72889IPR001005SANT/Myb domain
PfamPF002493.7E-83087IPR001005SANT/Myb domain
CDDcd001673.45E-93387No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRRPPYRCFR DDEEAKDVEA EMYGPTLKKG PCTPDEDIAL VDYITRNGGH GNWGRLPKLA  60
GLNRCAISKE LPGRTDNDIK NHWNSHLSKQ LLAMGIDPRT HMSIPDSLHP DFLKLQADAA  120
NFFVKLQSRS TIKSGHQICP NNVTNWTAPL YEEVSSLQPT YYGAAGEQSD AMAVPQQIFE  180
SSDAAMPAWN ISMNTVQQAS IIAVSIARSN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_13834A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.19e-25myb domain protein 17