PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_13916A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

WOX

Protein Properties

Length: 232aa MW: 24757.2 Da PI: 6.2222

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_13916A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.4	3.6e-06	16	36	37	53
C....TS-HHHHHHHHHHHHH CS Homeobox 37 l....gLterqVkvWFqNrRa 53 + + +++V++WFqNrR Oropetium_20150105_13916A 16 IerfgAVRDANVFYWFQNRRX 36 344456889***********5 PP
2	Wus_type_Homeobox	47	6.1e-16	1	35	24	58
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrk 58 +++P+k+e+ ri++ +e++G+++d+NVfyWFQNr+ Oropetium_20150105_13916A 1 MVNPAKDETARIRRLIERFGAVRDANVFYWFQNRR 35 78********************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MVNPAKDETA RIRRLIERFG AVRDANVFYW FQNRRXXXXX XXXXXQQACG GANPAAQLPS 60 AAAAAAQLHG FSNGASHYVM HGHASARTDG TGMPTSGPVP PSSVAAAAPR FFGDDVDGGG 120 DDLFAISRQM GLMTRGEDHH RCGYMANDTT QLSYHYQPQP AEMTTASIQV FINGVVYDVP 180 GGEGTLLDLA GTFGRDAVLV HSSGEILPVN EHGVLMKSLQ MGESYYLVGL I*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_13916A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005249	2e-52	AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21.
GenBank	AP014964	2e-52	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	2e-52	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683622.1	4e-88	WUSCHEL-related homeobox 10
Swissprot	Q6Z3L4	2e-65	WOX10_ORYSJ; WUSCHEL-related homeobox 10
TrEMBL	A0A1E5VIR5	6e-92	A0A1E5VIR5_9POAL; WUSCHEL-related homeobox 10
STRING	Pavir.Fb01029.1.p	4e-87	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	9e-15	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_13916A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]