PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_13925A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

M-type_MADS

Protein Properties

Length: 91aa MW: 9863.55 Da PI: 11.0089

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_13925A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.3	1.5e-16	16	60	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+i+nk rqvtfskRr ++KKA+ELS+ vav++fs+ gk + Oropetium_20150105_13925A 16 KPISNKEARQVTFSKRRPSLFKKASELSTY---VVAVVVFSPGGKSFS 60 78************************95...6******999665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-20	8	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.507	8	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.14E-21	9	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-10	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.7E-18	18	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-10	30	45	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MVKVKMTKGR KTIEIKPISN KEARQVTFSK RRPSLFKKAS ELSTYVVAVV VFSPGGKSFS 60 FGHPSVYSIV DHFLATTGGH AMGANRPCYA *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_13925A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002445267.2	3e-28	agamous-like MADS-box protein AGL29
Refseq	XP_002488981.1	2e-28	agamous-like MADS-box protein AGL61, partial
Swissprot	Q9FKK2	2e-20	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A3S6K9H7	2e-28	A0A3S6K9H7_BAMOL; MADS70
STRING	Sb07g007306.1	1e-27	(Sorghum bicolor)
STRING	Sb07g007373.1	1e-27	(Sorghum bicolor)
STRING	Sb0836s002010.1	6e-28	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1224	36	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-22	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_13925A

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]