PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_13978A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Protein Properties

Length: 260aa MW: 30347.3 Da PI: 9.3438

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_13978A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.8	3e-16	161	251	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k +t+s+v+ +l lp +f+++h k ++ +tl de+ +++ + k++ l++GW++F+ +++L +gD +vF+l Oropetium_20150105_13978A 161 FVKPMTQSHVTGGFWLGLPTTFCRKHLPK--RDERITLVDENDDEFDTLYLAPKTG----LSAGWRGFAIEHELVDGDCLVFEL 238 89**********************433..4457***********444444....9********************9 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 +r++f +v ++r+ Oropetium_20150105_13978A 239 LERTRF--KVYIIRA 251 988888..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.06E-23	155	252	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.1E-20	156	252	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.26E-26	159	250	No hit	No description
PROSITE profile	PS50863	11.758	161	252	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.5E-14	161	251	IPR003340	B3 DNA binding domain
SMART	SM01019	8.6E-18	161	252	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MADAVSYEEQ QRRQIEANKR KLEELQLHHL SAALREAAAK PSPAKKRKAR VPRHAADEPL 60 RRSGRVASLA EKPQYREDQR FHLLLFLRRQ DQTNPTEMRL WWRRVCAQVV PDFERKIRRT 120 SGRGRRNDLD NRVYATDEER TYAINKAEEL EEGLRSGFPT FVKPMTQSHV TGGFWLGLPT 180 TFCRKHLPKR DERITLVDEN DDEFDTLYLA PKTGLSAGWR GFAIEHELVD GDCLVFELLE 240 RTRFKVYIIR ASSYHENDD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_13978A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972573.1	1e-125	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-112	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A368RHI4	1e-124	A0A368RHI4_SETIT; Uncharacterized protein
STRING	Si014404m	1e-124	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-55	B3 family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_13978A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]