PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_13994A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NF-YC

Protein Properties

Length: 242aa MW: 26482 Da PI: 4.1105

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_13994A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	140.2	5.2e-44	83	181	3	98
NF-YC 3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 ++ w++q ie+++dfk +lPlarikki+kad+dvkmi+ eaPv+++kace+filelt+r+w + +krrtl++sd+ aa+ Oropetium_20150105_13994A 83 QALWADQmdeIEQTADFKSPSLPLARIKKIMKADDDVKMIAGEAPVVFAKACEMFILELTMRAWRQIGGTKRRTLQRSDVVAAI 166 778999877789********************************************************************** PP NF-YC 84 trtdifdflvdivpr 98 ++td fdfl+di+p+ Oropetium_20150105_13994A 167 AKTDNFDFLIDIIPE 181 **********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.68E-27	76	175	IPR009072	Histone-fold
Pfam	PF00808	3.0E-19	103	166	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.3E-34	104	181	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MEQPSPIKEN EGATNGDDYA EYATTAYEPV PLSSVLPSAD GAPSPPASQG APTLPSAPPV 60 SALEQAQQLF KQQELLKQKQ LFQALWADQM DEIEQTADFK SPSLPLARIK KIMKADDDVK 120 MIAGEAPVVF AKACEMFILE LTMRAWRQIG GTKRRTLQRS DVVAAIAKTD NFDFLIDIIP 180 EILNGDCVVG MPPTTTLSTM MPSYIPGMTD PFGMYANQQP VLYAWPDPQQ EQQTSDGERD 240 E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	6e-43	89	180	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	RRTLQRS

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_13994A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q8LCG7	4e-47	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15703	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	5e-47	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_13994A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]