PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_14029A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NF-YC

Protein Properties

Length: 151aa MW: 15714.3 Da PI: 4.0667

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_14029A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	62.2	1e-19	64	115	48	99
NF-YC 48 skacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 kace+fi eltlr w ha+e krrtl+k+di+aa+ r+++ dflv +d Oropetium_20150105_14029A 64 QKACEIFIQELTLRGWRHAKEDKRRTLQKNDITAAIGRSEVLDFLVPSDSED 115 49*******************************************9776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-15	49	109	IPR009072	Histone-fold
SuperFamily	SSF47113	1.55E-11	64	108	IPR009072	Histone-fold
Pfam	PF00808	5.9E-8	64	99	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MEELPPSLTV NEGVATDGDT PTTCAATTNQ PSAVASAAPS AGGAALPPVS RDAPVIGQQL 60 SDDQKACEIF IQELTLRGWR HAKEDKRRTL QKNDITAAIG RSEVLDFLVP SDSEDSDQQK 120 GASVAVPSTT AVQDDDDPNA NVIASEALRM *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-18	49	109	36	90	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	92	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_14029A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q8LCG7	2e-18	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A3L6PNJ3	1e-22	A0A3L6PNJ3_PANMI; Uncharacterized protein
STRING	Pavir.Fa02054.1.p	4e-23	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	5e-20	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_14029A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]