PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14046A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 187aa    MW: 20715.7 Da    PI: 7.9704
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14046AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY36.41e-111101422760
                                E-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                       WRKY  27 CtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                Ct+++Cpvk+kve++  d+++ ei+Y+geHnh+k
  Oropetium_20150105_14046A 110 CTHPSCPVKRKVETTV-DGQIAEIVYSGEHNHPK 142
                                ****************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.3E-4105142IPR003657WRKY domain
PROSITE profilePS508118.834105143IPR003657WRKY domain
PfamPF031061.4E-6110141IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-8110143IPR003657WRKY domain
SuperFamilySSF1182902.75E-7110143IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MQGREKIAAL KPVASRPFST FRSFSKRLED FTANCSQPIN IREEMNLIRP KAIRLTSLPS  60
DLPTEISATI DAGSSVLEEM EVDTQQVVSP DHLATYNAVR KPLGSLKNCC THPSCPVKRK  120
VETTVDGQIA EIVYSGEHNH PKPRPLRKLL SSTSMEVVVA DLRDNNNVEA EIQIGERNQD  180
PVKRIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14046A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819931.13e-63probable WRKY transcription factor 3
RefseqXP_025819932.13e-63probable WRKY transcription factor 3
TrEMBLA0A0A9G2V51e-71A0A0A9G2V5_ARUDO; WRKY3
STRINGSi014939m5e-60(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.24e-14WRKY family protein