PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14357A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 244aa    MW: 26783.1 Da    PI: 10.2654
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14357AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.4e-18122176256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ ++t+ q + Le+ F+ ++ +s++++ eLA+++gL+ rqV vWFqNrRa+ k
  Oropetium_20150105_14357A 122 RKKLRLTSAQATMLEDTFRAHSILSHAQKHELARRIGLSARQVEVWFQNRRARTK 176
                                788899***********************************************98 PP
2HD-ZIP_I/II1132e-36122210189
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rl++ q+++LE++F++++ L++ +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+rL+++ 
  Oropetium_20150105_14357A 122 RKKLRLTSAQATMLEDTFRAHSILSHAQKHELARRIGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDRLTDENARLRRDL 205
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLre 89 
                                +e+r+
  Oropetium_20150105_14357A 206 AEIRA 210
                                99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-18106179IPR009057Homeodomain-like
PROSITE profilePS5007117.248118178IPR001356Homeobox domain
SMARTSM003898.9E-14120182IPR001356Homeobox domain
CDDcd000868.19E-13122179No hitNo description
PfamPF000463.6E-16122176IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-18122181IPR009057Homeodomain-like
PRINTSPR000314.5E-6149158IPR000047Helix-turn-helix motif
PROSITE patternPS000270153176IPR017970Homeobox, conserved site
PRINTSPR000314.5E-6158174IPR000047Helix-turn-helix motif
SMARTSM003402.8E-15178221IPR003106Leucine zipper, homeobox-associated
PfamPF021832.7E-7178210IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSSLTTAGSS MEDEEFFDTR LSLEIGETSR PQRQTTTTTT VRLFGELISP QDRAELRLPT  60
PAGRNKKRAE SGAAIATRGG GRHNKKAKTT SQADQNDDGD HRRSPSDDGD LRIPSVDGGS  120
SRKKLRLTSA QATMLEDTFR AHSILSHAQK HELARRIGLS ARQVEVWFQN RRARTKLKQT  180
EVDCELLRRW CDRLTDENAR LRRDLAEIRA AAGTNKLPAA VSAVCPSCCD KKAMAIVVAG  240
DVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126SRKKLRL
2170178RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14357A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798902e-31AC079890.13 Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence.
GenBankAF2111932e-31AF211193.1 Oryza sativa homeodomain-leucine zipper transcription factor (Hox1) gene, complete cds.
GenBankAK0654042e-31AK065404.1 Oryza sativa Japonica Group cDNA clone:J013006I17, full insert sequence.
GenBankAP0149662e-31AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-31CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankCT8329442e-31CT832944.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107F07, full insert sequence.
GenBankCT8329452e-31CT832945.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M16, full insert sequence.
GenBankX966812e-31X96681.2 Oryza sativa mRNA for DNA-binding protein (Oshox1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951890.14e-71putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX61e-50HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A3L6RW698e-70A0A3L6RW69_PANMI; Putative homeobox-leucine zipper protein HOX26
STRINGPavir.J13660.1.p3e-70(Panicum virgatum)
STRINGSi018305m2e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-40homeobox protein 2