PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14389A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Whirly
Protein Properties Length: 162aa    MW: 17586 Da    PI: 9.4576
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14389AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly110.51.3e-343712253138
                     Whirly  53 qsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrs 136
                                + f+ls+tev++l++l++ esceffhdp++k+s eG+v+k+l++ Pl + sG+fvnl+v n+l+k+ +++svP++k+efavlr+
  Oropetium_20150105_14389A  37 ELFSLSPTEVGSLISLGPAESCEFFHDPSMKSSLEGQVKKSLSLTPLGNDSGYFVNLTVLNNLQKTTDRLSVPITKGEFAVLRT 120
                                67*********************************************************************************9 PP

                     Whirly 137 ll 138
                                 l
  Oropetium_20150105_14389A 121 TL 122
                                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.107.1E-8537IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.73E-508161IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.3E-3236120IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.102.5E-4038142IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGGRDSSSGK KYASYTVFKG KAALSVHPIL PSFSKLELFS LSPTEVGSLI SLGPAESCEF  60
FHDPSMKSSL EGQVKKSLSL TPLGNDSGYF VNLTVLNNLQ KTTDRLSVPI TKGEFAVLRT  120
TLGYALPRIM GWDQALANHH PAPQASKPRV ERPHPDSEWE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A2e-4691349165StWhy2
3n1i_A2e-4691349165protein StWhy2
3n1j_A2e-4691349165Protein StWhy2
3n1k_A2e-4691349165protein StWhy2
3n1l_A2e-4691349165protein StWhy2
4kop_A3e-4681348165Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B3e-4681348165Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C3e-4681348165Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D3e-4681348165Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14389A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951836.15e-89single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotQ8VYF72e-46WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A1E5VBK32e-93A0A1E5VBK3_9POAL; Single-stranded DNA-bindig protein WHY2, mitochondrial
STRINGSi018290m3e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.18e-49WHIRLY 2