PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14413A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 208aa    MW: 22835.9 Da    PI: 7.5767
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14413AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.16.1e-203175145
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               krie + +rqv fskR+ng++KKA+ LSvLC+a va i fs+ gk
  Oropetium_20150105_14413A 31 KRIEVEEKRQVCFSKRKNGLFKKASDLSVLCGAHVAAIAFSPGGK 75
                               79****************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-312382IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-272393IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.8242383IPR002100Transcription factor, MADS-box
CDDcd002651.43E-352497No hitNo description
PRINTSPR004041.0E-182545IPR002100Transcription factor, MADS-box
PfamPF003192.3E-243279IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-184560IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-186081IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MARKKESLGE AEAGEDRKRK KTMGRQKIEM KRIEVEEKRQ VCFSKRKNGL FKKASDLSVL  60
CGAHVAAIAF SPGGKPFSFG RPTVQAVVDR FFTDSSGAPA MGPAPVNQAL LEEFYREEDL  120
LAEALEAERN RKEGLDAAIR RGSVWTGGVD GKSVTNLLAM RGALEKVQAD MAERLHEFMT  180
KEPMGTDVGG VFHYPGDHGR DANDDEY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220RKKESLGEAEAGEDRKRKK
21620RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14413A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104108.11e-44agamous-like MADS-box protein AGL61
RefseqXP_025813008.12e-44MADS-box protein AGL71-like
TrEMBLA0A2T7DXF84e-44A0A2T7DXF8_9POAL; Uncharacterized protein
STRINGGSMUA_Achr5P26530_0015e-41(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-27AGAMOUS-like 61