PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14549A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 244aa    MW: 27534.5 Da    PI: 8.9213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14549AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEde+lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Oropetium_20150105_14549A 14 KGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                               79******************************99************97 PP
2Myb_DNA-binding55.11.7e-1767111147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg++T++Ed+l+++++ +lG++ W++Ia++++ gRt++++k++w+++
  Oropetium_20150105_14549A  67 RGNFTADEDDLIIKLHGLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                                89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.029961IPR017930Myb domain
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
SuperFamilySSF466892.13E-2913108IPR009057Homeodomain-like
PfamPF002492.9E-151461IPR001005SANT/Myb domain
CDDcd001672.76E-111661No hitNo description
PROSITE profilePS5129427.72262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2765117IPR009057Homeodomain-like
SMARTSM007178.4E-1766114IPR001005SANT/Myb domain
PfamPF002494.5E-1667111IPR001005SANT/Myb domain
CDDcd001671.11E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TADEDDLIIK LHGLLGNKWS LIAARLPGRT DNEIKNYWNT HVRRKLVARG  120
IDPVTHRPID PPVAVSFHQQ PHHQHQASPI EPSRCPDLNL DLCISPPSPF QQREQQQQRE  180
HEEDVKPPIL VKREKVLQAG TSRGLCFGCS LGLINKGSCS CSSDDHFLGL RVGVLDFRSL  240
EMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14549A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794071e-162HF679407.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB1 protein.
GenBankJQ2554771e-162JQ255477.1 Saccharum hybrid cultivar Co 86032 MYB42 (MYB42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822035.11e-122myb-related protein Zm38-like
SwissprotP200251e-115MYB38_MAIZE; Myb-related protein Zm38
TrEMBLA0A2S3I4H71e-121A0A2S3I4H7_9POAL; Uncharacterized protein
TrEMBLA0A2T7DAJ91e-121A0A2T7DAJ9_9POAL; Uncharacterized protein
STRINGPavir.J11802.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.15e-91myb domain protein 4
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]