PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14562A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SRS
Protein Properties Length: 309aa    MW: 31429.7 Da    PI: 8.1906
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14562AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702221.41.9e-681062503153
                     DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsal 86 
                                +gt+sCqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaakrrerqqqla+        aa++ skr+r+  ++++s++
  Oropetium_20150105_14562A 106 AGTISCQDCGNQAKKDCVHMRCRTCCKSRGFDCATHVKSTWVPAAKRRERQQQLATG------GAAAEPSKRPRDAAAAQRSSA 183
                                6899*************************************************9986......446789999999977777776 PP

                     DUF702  87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                + t+++s+ ++++   + +P+evsseavfrcvr++ vd++++e+aYqtavsi+GhvfkGiL+d G++
  Oropetium_20150105_14562A 184 TPTTTASSGEQQQQMSTVFPREVSSEAVFRCVRLGPVDEDDAEVAYQTAVSIAGHVFKGILHDVGPD 250
                                666665555555555566***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.3E-63108250IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.0E-28110152IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.9E-22202249IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAGFPLGGGG GARGDHHPSV NHPSSGSGGA TTDSTAAAAA AAAAAYHHLY TTTVSRGGAG  60
FQLWPPHHQE HSFYAPSIIR FADDPAAGSS SSRGGGGRGS ASGLGAGTIS CQDCGNQAKK  120
DCVHMRCRTC CKSRGFDCAT HVKSTWVPAA KRRERQQQLA TGGAAAEPSK RPRDAAAAQR  180
SSATPTTTAS SGEQQQQMST VFPREVSSEA VFRCVRLGPV DEDDAEVAYQ TAVSIAGHVF  240
KGILHDVGPD PSAAGGMMMI RQQHAAEGSS PSTAAAAPVS SSAVVMDPYP TPGGPCSGAP  300
FFHGHHPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00152DAPTransfer from AT1G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14562A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687732e-65EU968773.1 Zea mays clone 324045 SHI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821984.11e-111protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A3L6PPK21e-118A0A3L6PPK2_PANMI; Protein SHI RELATED SEQUENCE 1-like
STRINGPavir.Fb02329.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-50Lateral root primordium (LRP) protein-related