PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14770A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 233aa    MW: 24789.1 Da    PI: 8.7669
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14770AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF711.1e-221765149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               krie++  rqv fskRr+g++KKA+ELS+LC+aeva ++fs+ gk + +
  Oropetium_20150105_14770A 17 KRIESDEARQVCFSKRRAGLFKKASELSTLCGAEVAAVVFSPAGKAFSF 65
                               79******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-35968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.773969IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-29981IPR002100Transcription factor, MADS-box
CDDcd002651.56E-401083No hitNo description
PRINTSPR004041.6E-201131IPR002100Transcription factor, MADS-box
PfamPF003193.4E-261865IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-203146IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-204667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0009960Biological Processendosperm development
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAPTRRPSMG RQKIEIKRIE SDEARQVCFS KRRAGLFKKA SELSTLCGAE VAAVVFSPAG  60
KAFSFGHPSV ESILDRFLAS SSSPHHGAAG SSAAGDRVVS ELNRQHGELR ALLDAEKARQ  120
ERVDETMRKE RAAKSHAMAW IDADTDNMRY DELAAFEAAL TSVQAAVKAS ADQLLRDALV  180
VDMMGRRGRL AAGGVLDFNN AFGVGGAQLL PPGFFSGVDA QGFGHAILGP SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-189108194MEF2C
5f28_B6e-189108194MEF2C
5f28_C6e-189108194MEF2C
5f28_D6e-189108194MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14770A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825087.11e-102agamous-like MADS-box protein AGL29
TrEMBLA0A1E5VA381e-104A0A1E5VA38_9POAL; Agamous-like MADS-box protein AGL61
STRINGPavir.J11717.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-34AGAMOUS-like 61