PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14777A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 250aa    MW: 27219.7 Da    PI: 4.6305
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14777AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.9e-093271945
                               TTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwq 45
                                G++ W+ Ia +++ gRt++++k++w 
  Oropetium_20150105_14777A  3 VGNK-WAQIATHLP-GRTDNDVKNFWS 27
                               6999.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.847134IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-11229IPR009057Homeodomain-like
SuperFamilySSF466891.14E-6234IPR009057Homeodomain-like
PfamPF002495.8E-7227IPR001005SANT/Myb domain
CDDcd001677.54E-6526No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEVGNKWAQI ATHLPGRTDN DVKNFWSTRQ KRLARLFLQE PPRRRAASQR GCSTSSPLAL  60
SRELLRAQQE QEPNSSMITF DATPYQEPLE GTTTAYYEVG QSSSQEPHEV QQQQCIHDAP  120
LPEVLLLPPP VDGAMEPSSP NTDPFLGTNA EIHVPGAGAA LASLHHSLLV EPLAVVPAEP  180
LSFGPDDGGG GTVLALCDNV LAPYVDPLVV IPADADPSLW RDVAAAVRVY TRLRLDLLRQ  240
EMIDFFSRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14777A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.18e-16MYB family protein