PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14787A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ERF
Protein Properties Length: 149aa    MW: 16269.7 Da    PI: 11.6641
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14787AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.34.3e-144389353
                        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                               + G r+++ +grW+Ae+r p++   rkr ++g+fgt++eAa a++ a  ++
  Oropetium_20150105_14787A 43 FVGTRRRE-WGRWAAELRMPRT---RKRLWIGTFGTPKEAAHAYDGAIFCF 89
                               56667666.**********965...4*******************887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.99442103IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1542103IPR016177DNA-binding domain
SMARTSM003802.9E-2042109IPR001471AP2/ERF domain
CDDcd000181.48E-1843105No hitNo description
PRINTSPR003671.2E-64354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-2143104IPR001471AP2/ERF domain
PfamPF008479.9E-104488IPR001471AP2/ERF domain
PRINTSPR003671.2E-66581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAAAVALMSS SGDASKVNKK SCRRSISSRN SATTPATRKN GGFVGTRRRE WGRWAAELRM  60
PRTRKRLWIG TFGTPKEAAH AYDGAIFCFY GDHVPRIRKL NFPTAPRPNI PEDVRAGLTV  120
ANIKAIAEKY AHSLADFVPP PRPPPTPV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14787A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154175.12e-37ethylene-responsive transcription factor ERF015-like
TrEMBLA0A287WH141e-38A0A287WH14_HORVV; Uncharacterized protein
STRINGSi014944m6e-36(Setaria italica)
STRINGSb07g027280.19e-36(Sorghum bicolor)
STRINGGRMZM2G033656_P013e-35(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.12e-23ERF family protein