PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_14915A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TCP
Protein Properties Length: 391aa    MW: 41663.4 Da    PI: 9.1159
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_14915AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP138.94.2e-43942524134
                        TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                                 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+eWLlqqa+pai ++tgt++++a+++  a+s +s +++++
  Oropetium_20150105_14915A  94 XKRPTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETVEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSGHHHHH 177
                                699****************************************************************99977777777777666 PP

                        TCP  87 sg....kaaksaa.kskksqksaasalnlakesr......................akarararertrekmrikn 134
                                s+    +aa++++ ++ ++q++ a++l  +++++                      a + +r+r+r++++ ++++
  Oropetium_20150105_14915A 178 SAaasrAAAAFHHlQQPPQQHDVAAMLGWNQQHQlxxxxxxxxxxxxxxxlqqdpgAGEFMRKRYREADDLFKDT 252
                                6688886677777699999*********99999999999999999999999999999999999999998888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.32598152IPR017887Transcription factor TCP subgroup
PfamPF036343.9E-3798207IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDHGAAPSSS TSTSTNSSRS AXXXXXXXXX HPFYYAAVQG AAAAAGMAPF MGSLSIVPGA  60
VAEPQPVAPA APAVASSGGA DKKQXXXXXX XXXXKRPTKD RHTKVDGRGR RIRMPALCAA  120
RVFQLTRELG HKTDGETVEW LLQQAEPAIV AATGTGTIPA NFSSLAVSLR SGHHHHHSAA  180
ASRAAAAFHH LQQPPQQHDV AAMLGWNQQH QLXXXXXXXX XXXXXXXLQQ DPGAGEFMRK  240
RYREADDLFK DTTAARQQQQ QHPDAEPEEE QKARALPTAM WAPNSSAAAG GGAAFWMQPA  300
WATFGGGGGG GTVQAPLQFM STRSGFHGAM ADSSIGMLAA LNNTTAAAGG NVQHQQHEEH  360
QQQPETMTRR XXXXXXXXXX XXXXGAASPQ *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_14915A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978832.14e-99transcription factor PCF3
SwissprotQ53PH26e-83PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0A9G9I11e-102A0A0A9G9I1_ARUDO; Uncharacterized protein
STRINGGRMZM2G003944_P011e-100(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-44TCP family protein