PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_15017A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NAC

Protein Properties

Length: 259aa MW: 28854.5 Da PI: 7.6637

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_15017A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.4	3.8e-42	16	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvka.eekewyfFskrdkkyatgkrknratks 80 ppGfrF Pt+eel+ +yL+++++g++ ++e+ i+ vd+y+++P+dL+ + + + ++++w+fF++r++++ +g r+ r+t s Oropetium_20150105_15017A 16 PPGFRFYPTEEELLGFYLRHRLAGTRPDVERLIPVVDLYSYHPRDLQpMagaA-NVsDREQWFFFCPRAERELHGGRPARTTPS 98 9**************************999**********7544532.2225569******************* PP NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWkatg+ v+s+ +++++g k+t+vfy+grap+g+kt+W m+ey++ Oropetium_20150105_15017A 99 GYWKATGSPSWVISStSSRVIGEKRTMVFYQGRAPTGTKTRWKMNEYKA 147 ****999998868889*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-47	6	176	IPR003441	NAC domain
PROSITE profile	PS51005	47.522	15	177	IPR003441	NAC domain
Pfam	PF02365	6.7E-23	16	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MNTTTTTIIS AEPVIPPGFR FYPTEEELLG FYLRHRLAGT RPDVERLIPV VDLYSYHPRD 60 LQPMAGAANV SDREQWFFFC PRAERELHGG RPARTTPSGY WKATGSPSWV ISSTSSRVIG 120 EKRTMVFYQG RAPTGTKTRW KMNEYKAVAE PEVPVALVPL RDIQLRNEFS VCRVYISTGT 180 LRSFDRRPLN HANASHDQAA TTAQNSHDSS SSGLRGTTMV IDPDGIDWNS LTMMIPLIAD 240 DDGLSFSGTD GLARTMWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	15	175	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	15	175	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	15	175	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	15	175	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	1e-30	15	175	20	166	NAC domain-containing protein 19
3swm_B	1e-30	15	175	20	166	NAC domain-containing protein 19
3swm_C	1e-30	15	175	20	166	NAC domain-containing protein 19
3swm_D	1e-30	15	175	20	166	NAC domain-containing protein 19
3swp_A	1e-30	15	175	20	166	NAC domain-containing protein 19
3swp_B	1e-30	15	175	20	166	NAC domain-containing protein 19
3swp_C	1e-30	15	175	20	166	NAC domain-containing protein 19
3swp_D	1e-30	15	175	20	166	NAC domain-containing protein 19
4dul_A	1e-30	15	175	17	163	NAC domain-containing protein 19
4dul_B	1e-30	15	175	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_15017A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012619	1e-118	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978711.1	1e-106	NAC domain-containing protein 90
Swissprot	Q9FMR3	5e-63	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	K3ZJF4	1e-104	K3ZJF4_SETIT; Uncharacterized protein
STRING	Si026707m	1e-105	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	7e-62	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_15017A

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]