PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15111A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 228aa    MW: 25180.8 Da    PI: 9.7329
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15111AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.31.3e-18121361127
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eek.ewyfFskrdkkyatgk.rk.nratk 79 
                                +p+Gf+F Pt  el+ +yL++ v+gk+++ ++  +  +d+y+++P  L +++++ + +  wyf + ++ k+ +++ +  +r+  
  Oropetium_20150105_15111A  12 VPAGFHFTPTLAELIRCYLNPWVAGKPVDKSTGlVCLADVYSADPDALTRRFRQwGYRgVWYFLCVARWKAGNKRkKFsRRVEG 95 
                                589************************88866647777**********965555333448999999998888644133155888 PP

                        NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                 g W+  g++k+v +      gl + L f   ra+ + kt W+m+e +
  Oropetium_20150105_15111A  96 GGAWRGIGTSKPVGR------GLGQRLGFE-YRAKWSAKTVWIMEEIS 136
                                99***********88......566667774.5788889*******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-227156IPR003441NAC domain
PROSITE profilePS5100523.59312157IPR003441NAC domain
PfamPF023659.3E-1213135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MQELMPALRP SVPAGFHFTP TLAELIRCYL NPWVAGKPVD KSTGLVCLAD VYSADPDALT  60
RRFRQWGYRG VWYFLCVARW KAGNKRKKFS RRVEGGGAWR GIGTSKPVGR GLGQRLGFEY  120
RAKWSAKTVW IMEEISTSLA AAADGVGVKV VCKVYHPRKK DSSAAVAAAD PDEEEETNEI  180
GCKRPASDEY DEEAVRKRAK MDGLDECPAA TRSAITTHQM GMRRPPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15111A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978357.12e-45NAC domain-containing protein 26
TrEMBLA0A368S1U22e-44A0A368S1U2_SETIT; Uncharacterized protein
TrEMBLK3YCR36e-45K3YCR3_SETIT; Uncharacterized protein
STRINGSi012013m1e-45(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.26e-11NAC domain containing protein 47