PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15368A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WOX
Protein Properties Length: 268aa    MW: 28327.1 Da    PI: 8.1526
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15368AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-191574357
                               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               +R+++t+eql  Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Oropetium_20150105_15368A 15 TRWCPTPEQLMLLEEMYRGgLRTPNASQIQQITAHLstygRIEGKNVFYWFQNHKARDRQ 74
                               7*****************99*************************************996 PP
2Wus_type_Homeobox117.55.9e-381475364
          Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                                tRW+PtpeQ+++Lee+y+ GlrtPn+++iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqk
  Oropetium_20150105_15368A 14 PTRWCPTPEQLMLLEEMYRGGLRTPNASQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQK 75
                               58***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.1E-41279IPR001356Homeobox domain
CDDcd000868.57E-51575No hitNo description
SuperFamilySSF466891.28E-101575IPR009057Homeodomain-like
PfamPF000462.8E-171574IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-61674IPR009057Homeodomain-like
PROSITE profilePS500719.752075IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MPSQQQQQHV VPAPTRWCPT PEQLMLLEEM YRGGLRTPNA SQIQQITAHL STYGRIEGKN  60
VFYWFQNHKA RDRQKLRRRL CMNHHLLTCA QYYAAAAAHH HGGFLAAAAA VPPTTLPLAP  120
TAYSVFDHQA AATAGQLLSS PATSPTPAAA AAAAAAAAAY GYYYPATTAF APPASRCATT  180
PPSPNQLLPF NYHHQGGGEG FVAPAVAECS LGKLDNFGVS AALDDVDIMG PPGFEAPAAA  240
AAFCRPLKTL DLFPGGLKVK GEQHDVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15368A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401842e-96BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269462e-96KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809937.12e-86putative WUSCHEL-related homeobox 2
TrEMBLA0A1E5VXX14e-89A0A1E5VXX1_9POAL; Putative WUSCHEL-related homeobox 2
STRINGPavir.J22602.1.p3e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-39WOX family protein