PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_15385A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 198aa MW: 21492 Da PI: 6.7011

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_15385A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.1	4.8e-41	26	122	4	100
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 Ck+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpee+r+da+ss+vyeA ar+rdPvyG++g i++lq+q+ Oropetium_20150105_15385A 26 XCKILRRRCVDRCVLAPYFPPTEPHKFATAHRVFGASNIIKLLQELPEEHRSDAVSSMVYEASARIRDPVYGCAGAIWQLQKQV 109 6********************************************************************************* PP DUF260 88 eqlkaelallkee 100 + lka+la+++++ Oropetium_20150105_15385A 110 NDLKAQLARAHAQ 122 ******99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.329	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-40	26	120	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MTLQHGPSTP PPPPSPXXXX XXXXXXCKIL RRRCVDRCVL APYFPPTEPH KFATAHRVFG 60 ASNIIKLLQE LPEEHRSDAV SSMVYEASAR IRDPVYGCAG AIWQLQKQVN DLKAQLARAH 120 AQQAHLLALV CCMEVDEHLA SPSPSPPVGP GAVAYCTVDY YSSQQQGAAD ALHVVDAGGL 180 QVMQANPVSW GDESIWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-39	27	122	15	110	LOB family transfactor Ramosa2.1
5ly0_B	3e-39	27	122	15	110	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_15385A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960340.1	9e-77	LOB domain-containing protein 1
Swissprot	Q9LQR0	1e-51	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	4e-51	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A0A9FQU7	2e-76	A0A0A9FQU7_ARUDO; Uncharacterized protein
STRING	Si024430m	3e-76	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-49	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_15385A