PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_15399A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB_related

Protein Properties

Length: 1532aa MW: 167567 Da PI: 7.5787

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_15399A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.7	1.5e-09	725	767	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e + + +++G++ +++I++ + ++t +c+++++k+ Oropetium_20150105_15399A 725 PWTQEEKEMFMEMLAKFGKD-FSKISSFLA-HKTTADCVEFYYKH 767 8***************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.89E-15	709	771	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.394	721	772	IPR017884	SANT domain
SMART	SM00717	1.0E-10	722	770	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-7	724	767	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-8	724	770	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.897	928	979	IPR017884	SANT domain
SMART	SM00717	1.6E-5	929	977	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.18E-8	932	979	IPR009057	Homeodomain-like
CDD	cd00167	4.25E-4	933	971	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1532 aa Download sequence Send to blast
CSQDRRTEEL RSWLRLAYVT PGGGRSWIQA PQERRRRRRG CRRRHRIGGT ICYYRQGGGA 60 YDRSYPDEMP PGYPPSRSDR YWMDDEGGGY KGFSRCGGGR RDGRDMRGGS YRRSPFRSYG 120 SDFSRNHQEQ PPPPPPRRSS LRSVAVPICY DSPGNRVDRG DRDSLPRVTP WRRRESRSEV 180 AGGHASSGQS TRPAASEKEV SPHPPSLSSP REAEEEAPRK KARLGWGQGL AKYEKQKVHG 240 PTDPAEAVAD GSLSKGSFSC TCGMRIAGCC ATTCTCAPED KSCALAANTV RKSAQDAPGS 300 DDQACNNEFP IKIDQLGGDP IDSLASLLSK FLQHDSCAGD SKDPTSTSKL LLLKESISKE 360 IEKTELEIDS LEGELKCVTT EAGTAPEDSP TGVTYTENVS HSTVASKVPG NLKICAKSHV 420 EEPGEVSPCP KMPVVQDANS KDAEMMEIET APVQNAKTAS SEESAACPGV TEAHARTAAA 480 DGPLKASARA KPHINVDIET LEASSCHIDT NSVKPDVLPG RQCLYPNHKY NLLSSLKSSN 540 HDIAKVANEL VFKHMPGDTP QPNLLASSQF STYSKNESVI KERLVLHKNR LRFKEQALTF 600 KFRALRYLWK EDVRLLCARK QRSKSSKRID QNSRTSHIGS QRQRSTNRSR LAMPAGNSSI 660 FPTPEISDVA NKLFSEFHIK RCRNYLKMPA LIIDEKEKEC LRFVSKNGLV EDPVAVEKER 720 VLINPWTQEE KEMFMEMLAK FGKDFSKISS FLAHKTTADC VEFYYKHHKS ESFREVKKLL 780 DQRQQQPSSN FLGAKSGKKW NREADAVSLD ILGVASAVAA QGLEYEKKAV KISTKSLIRN 840 GSNVSFAARK SNRECLDNIS LHERESVAAD VLAGICGTLS PEGMSSCITS SADPGQKISI 900 TGIEHILTPE IDKSFDEEDT IPDQECEVDP VDWNDDEKSI FVDAMNNYGK DFARISSCVK 960 SKSYEQCKVF FSKARKSLGL DLIHHGTADV TMLTSDTNGG RSDTDEACAA EMDSAICSTQ 1020 LFAKTEMDVC PTKSAIQGPN SCIISKQTEG DVSKGCDVSD VKTESEDKAD QTCSVDDHKR 1080 FSEVTHEPTC GSIDINCPET TEKLEGEDDT VDQRNINGCS TVSSSKEQAV LVNSETRMDG 1140 GSHHANALVK AGKFGPPASV VAESGIKENV HFSKMTDASS INAVSTSSYQ HSMTGDKPPS 1200 KPKPLVTPLT PKDLMPVQFS SVLPDPTSIR FEGIASITTS NFEDTGNMNN YPALKDQSQS 1260 GNQNGTLFRN IDGYSSHHLT TESPIVSERN ASSAVSTSHT DRFTITKFQN GRSSSLDLPN 1320 TTDGIHWDRK HNEVSDVSFR PCSRNSSSEG NEQVKRPGDV KLFGQILSHQ SSSQNSASCN 1380 GTKNNPRDRV SCSSRPAVTP HLGLEDRSVR SYSHLDGCTA QPLVMAKCQA SLAGVPFYSA 1440 KSGIFSDYQQ PSMQAHQSDP KRLERFSDPQ KRNGMELISG FQQPGKGNRF GGAGILVSGV 1500 SDPVAALKAQ YGPGSKITSC DVDPWKDIGS R*

Sequence ? help Back to Top

Protein Sequence Length: 1532 aa Download sequence Send to blast

CSQDRRTEEL RSWLRLAYVT PGGGRSWIQA PQERRRRRRG CRRRHRIGGT ICYYRQGGGA  60
YDRSYPDEMP PGYPPSRSDR YWMDDEGGGY KGFSRCGGGR RDGRDMRGGS YRRSPFRSYG  120
SDFSRNHQEQ PPPPPPRRSS LRSVAVPICY DSPGNRVDRG DRDSLPRVTP WRRRESRSEV  180
AGGHASSGQS TRPAASEKEV SPHPPSLSSP REAEEEAPRK KARLGWGQGL AKYEKQKVHG  240
PTDPAEAVAD GSLSKGSFSC TCGMRIAGCC ATTCTCAPED KSCALAANTV RKSAQDAPGS  300
DDQACNNEFP IKIDQLGGDP IDSLASLLSK FLQHDSCAGD SKDPTSTSKL LLLKESISKE  360
IEKTELEIDS LEGELKCVTT EAGTAPEDSP TGVTYTENVS HSTVASKVPG NLKICAKSHV  420
EEPGEVSPCP KMPVVQDANS KDAEMMEIET APVQNAKTAS SEESAACPGV TEAHARTAAA  480
DGPLKASARA KPHINVDIET LEASSCHIDT NSVKPDVLPG RQCLYPNHKY NLLSSLKSSN  540
HDIAKVANEL VFKHMPGDTP QPNLLASSQF STYSKNESVI KERLVLHKNR LRFKEQALTF  600
KFRALRYLWK EDVRLLCARK QRSKSSKRID QNSRTSHIGS QRQRSTNRSR LAMPAGNSSI  660
FPTPEISDVA NKLFSEFHIK RCRNYLKMPA LIIDEKEKEC LRFVSKNGLV EDPVAVEKER  720
VLINPWTQEE KEMFMEMLAK FGKDFSKISS FLAHKTTADC VEFYYKHHKS ESFREVKKLL  780
DQRQQQPSSN FLGAKSGKKW NREADAVSLD ILGVASAVAA QGLEYEKKAV KISTKSLIRN  840
GSNVSFAARK SNRECLDNIS LHERESVAAD VLAGICGTLS PEGMSSCITS SADPGQKISI  900
TGIEHILTPE IDKSFDEEDT IPDQECEVDP VDWNDDEKSI FVDAMNNYGK DFARISSCVK  960
SKSYEQCKVF FSKARKSLGL DLIHHGTADV TMLTSDTNGG RSDTDEACAA EMDSAICSTQ  1020
LFAKTEMDVC PTKSAIQGPN SCIISKQTEG DVSKGCDVSD VKTESEDKAD QTCSVDDHKR  1080
FSEVTHEPTC GSIDINCPET TEKLEGEDDT VDQRNINGCS TVSSSKEQAV LVNSETRMDG  1140
GSHHANALVK AGKFGPPASV VAESGIKENV HFSKMTDASS INAVSTSSYQ HSMTGDKPPS  1200
KPKPLVTPLT PKDLMPVQFS SVLPDPTSIR FEGIASITTS NFEDTGNMNN YPALKDQSQS  1260
GNQNGTLFRN IDGYSSHHLT TESPIVSERN ASSAVSTSHT DRFTITKFQN GRSSSLDLPN  1320
TTDGIHWDRK HNEVSDVSFR PCSRNSSSEG NEQVKRPGDV KLFGQILSHQ SSSQNSASCN  1380
GTKNNPRDRV SCSSRPAVTP HLGLEDRSVR SYSHLDGCTA QPLVMAKCQA SLAGVPFYSA  1440
KSGIFSDYQQ PSMQAHQSDP KRLERFSDPQ KRNGMELISG FQQPGKGNRF GGAGILVSGV  1500
SDPVAALKAQ YGPGSKITSC DVDPWKDIGS R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	3e-16	683	774	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	3e-16	683	774	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	41	RRRRRRGCR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_15399A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021303528.1	0.0	uncharacterized protein LOC8071259
Refseq	XP_021303529.1	0.0	uncharacterized protein LOC8071259
TrEMBL	A0A1Z5R1M0	0.0	A0A1Z5R1M0_SORBI; Uncharacterized protein
STRING	Sb09g002290.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-81	MYB family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_15399A