PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15410A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 156aa    MW: 17035.4 Da    PI: 8.5563
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15410AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.71.1e-2156120165
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                                +W++ e+ a +++r e+++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k   
  Oropetium_20150105_15410A  56 QWSHAETAAFLAIRAELDHSFLTTKRNKALWEAVSARLAAQGFARTPDQCKSKWKNLVTRFKGXX 120
                                7*************************************************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.48E-2555118No hitNo description
Gene3DG3DSA:1.10.10.602.1E-456112IPR009057Homeodomain-like
PfamPF138376.2E-1756118No hitNo description
PROSITE profilePS500907.67757113IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDPFHHLNSS FSNPYHPLLS PSPPHHFPPV LLAAEPPPPP SSLPSASPVD RERLPQWSHA  60
ETAAFLAIRA ELDHSFLTTK RNKALWEAVS ARLAAQGFAR TPDQCKSKWK NLVTRFKGXX  120
XXXXXXXXXQ TAEADSAAAA ASAARQFPFH DDGST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A3e-1451117167DNA binding protein GT-1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15410A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550802e-76AK355080.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1015K12.
GenBankAK3759482e-76AK375948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3110L24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805344.14e-55LOW QUALITY PROTEIN: trihelix transcription factor GT-3b-like
TrEMBLJ3M3M43e-53J3M3M4_ORYBR; Uncharacterized protein
STRINGOB05G11980.15e-54(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.15e-27Trihelix family protein