PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15466A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 205aa    MW: 21139.6 Da    PI: 9.0658
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15466AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-3079137259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ v+++tYeg+H h+
  Oropetium_20150105_15466A  79 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDKAVLITTYEGTHSHQ 137
                                7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-3363139IPR003657WRKY domain
SuperFamilySSF1182905.62E-2871139IPR003657WRKY domain
PROSITE profilePS5081128.90873139IPR003657WRKY domain
SMARTSM007741.3E-3578138IPR003657WRKY domain
PfamPF031067.1E-2780137IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSPARRALDG DSRASSDDGG GGGEAADDKR RSSGQHQDGT GTPERGENAA EGTSAAAAEA  60
PCRRARVSVR ARSEAPMISD GCQWRKYGQK MAKGNPCPRA YYRCTMAAGC PVRKQVQRCA  120
EDKAVLITTY EGTHSHQLPP AAAAMAKTTS AAAAMLLSGP AVSRDATAMF GHHHVAAPPP  180
QLFHSAPYVS AMGGATLSAS APQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-2565140175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15466A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149615e-50AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126135e-50CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440550.27e-81probable WRKY transcription factor 31 isoform X1
RefseqXP_021304147.16e-81probable WRKY transcription factor 31 isoform X2
SwissprotQ9XEC31e-60WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A1B6P6B92e-79A0A1B6P6B9_SORBI; Uncharacterized protein
TrEMBLA0A1B6P6D21e-79A0A1B6P6D2_SORBI; Uncharacterized protein
TrEMBLA0A1E5W7H09e-80A0A1E5W7H0_9POAL; WRKY transcription factor 6
STRINGOPUNC01G11770.12e-75(Oryza punctata)
STRINGSi022468m2e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.17e-43WRKY family protein