PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15472A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family M-type_MADS
Protein Properties Length: 128aa    MW: 14374.8 Da    PI: 10.1069
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15472AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.82.4e-0714332342
                               HHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF 23 KAeELSvLCdaevaviifss 42
                               K + LSvLCd+ vav+++s+
  Oropetium_20150105_15472A 14 KRKNLSVLCDIAVAVVVYSP 33
                               6678**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-6461IPR002100Transcription factor, MADS-box
PfamPF003191.4E-41434IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MPPHKLKIKW IQHKRKNLSV LCDIAVAVVV YSPGKADDPA TLPPLAEEAR RVLQRYKKLP  60
NRAKGNMMTE DFLLADRVEK TIRELEKLRL HNRGDEVSLT LNDMSLGRCG SHYGISPDLV  120
NASKALY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15472A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2444045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.18e-08AGAMOUS-like 92