PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15478A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 686aa    MW: 73386 Da    PI: 7.8
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15478AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16454500455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Oropetium_20150105_15478A 454 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 500
                                5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.9E-21447509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-17447504No hitNo description
SuperFamilySSF474591.15E-20448513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.006450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-13454500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-17456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
GARVWISFVS SEALSCRVAG EQEQFPATSF RTGDGIRRCI NAVVRDSNGW MGRVESSPLV  60
RRFHRNGDTS SACLATTPRV VRHPPVTTHL SPAVSPSTRM SRPTGAADDL LELLWDNGLP  120
ALRTTPSHFP PPFQPFTCSA AGSSRVHELD KQRRHDAVPP AIMEDDDXXX XXXXXXXPXX  180
XXXXXXXXXP WLHCPVIDDG DSDTAPLPPE FCAGLMMSGY SALHTAEPTE PESEPHLTAT  240
SSGIIARPQS NAAPAPSATR GAPPDTQQPK PSGGGEGVMN FTFFSRPLHW SHASAAAASP  300
GKPLESTVVQ TAAASRLRST PLFSEQRMAW LQPPKEPRAA AATPHAPPPA PTPHATTDGH  360
RRHVEAEAAA AATVTQHRLR PDARTRDATT TSSVCSGNGD GSQARPSSHQ HTGECSVSQD  420
EALIGHWLQD ADDEPSAGRR SAARGTKRSR TAEVHNLSER RRRDRINEKM RALQELIPNC  480
NKIDKASMLE EAIEYLKTLQ LQVQMMSMGS TGLCVPVPPT MLMQMQMPVV PTPMAAAAAA  540
APFPQLGGMG LGFGGMALGF AGGATQFPCP VMPGAPPMAM PPVGAKFGMP PFPHVLHGAA  600
APVEQREAAG PARPAPGGVG AGDHRRPPVP VALPVPQGMA RKDVMIGQSR AELILKPLVW  660
LVCRAGWREQ REPILPDHRE DVWLV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1458463ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15478A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6679004e-81AB667900.1 Oryza sativa Japonica Group APG mRNA for basic helix-loop-helix protein APG, complete cds.
GenBankAK2879584e-81AK287958.1 Oryza sativa Japonica Group cDNA, clone: J075053F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960433.21e-120transcription factor APG
TrEMBLA0A0A9P9871e-134A0A0A9P987_ARUDO; Uncharacterized protein
STRINGPavir.Ca01237.1.p1e-108(Panicum virgatum)
STRINGGRMZM2G062541_P011e-108(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-33phytochrome interacting factor 3