PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_15702A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 423aa    MW: 46279.5 Da    PI: 9.1307
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_15702AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.94.5e-41179255177
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                +Cq+egC+adls ak+yhrrhkvCe h+ka+vv + g++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++
  Oropetium_20150105_15702A 179 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVSAGGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 255
                                6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-34174241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.445177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.37E-39178257IPR004333Transcription factor, SBP-box
PfamPF031103.6E-31180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MMTGRLNAVT SAATGDEFPF APHVQQQQQP PAYLGFDHGA AGSGGGGVGQ RGGGNSIQQH  60
HHLYDGLDFA AAAALQFQAD APHHQQLLTL PSSLAPMAPP PPLPMPLQMP IPGMHGDVYP  120
ALGMVKREGE GGGRIGLNLG RRTYFSPGDM LAVDRLLMRS RLXXXXXXXX XXXHHQPPRC  180
QAEGCKADLS GAKHYHRRHK VCEYHAKASV VSAGGKQQRF CQQCSRFHVL TEFDEAKRSC  240
RKRLAEHNRR RRKPATTTTV PSSNKDGSPN AKKPNIAADV TSSYATDNKS LSTIMPTMSS  300
NTSSVISCLD HHHQGNKQQQ ARPTLTLGAS LQDKDHHHHQ QLSSTMLHVQ SSAGQQHHHQ  360
EQQQHFITSL QVQSNNNILS CSSVCSSXXX XXXXXXXLSD QTNNSNNGNN NNNMHLFEVD  420
FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-291802531184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236253KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_15702A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0339371e-150BT033937.1 Zea mays full-length cDNA clone ZM_BFc0033O21 mRNA, complete cds.
GenBankBT0342981e-150BT034298.1 Zea mays full-length cDNA clone ZM_BFc0007A11 mRNA, complete cds.
GenBankBT0657121e-150BT065712.1 Zea mays full-length cDNA clone ZM_BFc0041B17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965676.11e-157squamosa promoter-binding-like protein 10
SwissprotA2YFT91e-106SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE81e-106SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A0A9G6E51e-158A0A0A9G6E5_ARUDO; Sbp3
STRINGSi006559m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-43squamosa promoter binding protein-like 8