PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_15764A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 226aa MW: 23698.2 Da PI: 10.521

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_15764A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.1	4.5e-09	171	213	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L+ eN+aL++e++ l+k + +l+se+ Oropetium_20150105_15764A 171 RPRKKMRLPEIQQMVRSLSVENDALRQEMKALQKACTALTSEN 213 89**************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.7E-6	171	210	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MTAAVDSEAC AVVATAADII CSLRAADLAG WTPPWRNKQQ APADPSAGNE GDAQDQLLAW 60 PAVARGKRSR SRRGSSPXXX XXXXXXXXXX XXKRKKASRA RGSPPSPLDY SAGSGASSSG 120 AEDGGFCSPP PPVVMSSAGG GGLRAEPASK VGLPGCRPIL PVPPPRPAGQ RPRKKMRLPE 180 IQQMVRSLSV ENDALRQEMK ALQKACTALT SENGKLEVNK DRSVE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	71	KRSRSR
2	170	176	RPRKKMR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_15764A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054292	1e-50	BT054292.1 Zea mays full-length cDNA clone ZM_BFb0217J09 mRNA, complete cds.
GenBank	KJ728326	1e-50	KJ728326.1 Zea mays clone pUT6607 bZIP transcription factor (bZIP93) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811831.1	5e-67	collagen alpha-1(I) chain-like
TrEMBL	A0A2S3HHK3	1e-65	A0A2S3HHK3_9POAL; Uncharacterized protein
STRING	GRMZM2G050912_P01	6e-53	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_15764A