PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_15804A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

AP2

Protein Properties

Length: 450aa MW: 48824.6 Da PI: 8.7972

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_15804A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.6	6.6e-18	107	156	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g Oropetium_20150105_15804A 107 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 156 78*****************......55**********************997 PP
2	AP2	37.5	5.8e-12	199	249	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+++k g+W+A+I g +k+++lg + t+ eAa+ +++a+ k +g Oropetium_20150105_15804A 199 SRFRGVTQHK-CGKWEARISQlM---G-KKYVYLGLYETETEAAQVYDKAAIKCFG 249 789*****.7**65532...3.6******99********99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.24E-15	107	164	IPR016177	DNA-binding domain
Pfam	PF00847	8.7E-10	107	156	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.57	108	164	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-31	108	170	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.1E-17	108	164	IPR001471	AP2/ERF domain
CDD	cd00018	5.83E-22	199	259	No hit	No description
SuperFamily	SSF54171	2.03E-16	199	258	IPR016177	DNA-binding domain
Pfam	PF00847	1.9E-7	199	247	IPR001471	AP2/ERF domain
SMART	SM00380	3.7E-30	200	263	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.9E-16	200	257	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	14.934	200	257	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.9E-5	201	212	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.9E-5	239	259	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MTATKCAFHG VDGGGIGRKR DGDDDGSRMI FGFSIPAPHS RPAAVVTQQF FPAATTAAAA 60 VPAPTPARQL QQQAMERQCQ SVAAGAADPG TRSALRKSRR GPRSRSSQYR GVTFYRRTGR 120 WESHIWDCGK QVYLGGFDTA QAAARAYDQA AIKFRGVTAD INFTLHDYRD DIEKMNNFSK 180 EEFVQVLRRQ GAGFIRGSSR FRGVTQHKCG KWEARISQLM GKKYVYLGLY ETETEAAQVY 240 DKAAIKCFGK EAVTNFDPQA YELQRQRESA ACDGELDLEL SLGFACGEKG GGDPTAVADV 300 AFNTSAAGKL RTSLTLKLPE EEEAIAGYLP NRSIRTTRSP IRGAFGHHQA DDDDHARVPG 360 SRSTLHMIQM GQIGVGSSGG AAAETHMRRC WMEPGGGCNN WLPPYADYAS SAAAASSGFP 420 LELEQQLDSR CLAPQQQPAT ATVFIRRSS*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MTATKCAFHG VDGGGIGRKR DGDDDGSRMI FGFSIPAPHS RPAAVVTQQF FPAATTAAAA  60
VPAPTPARQL QQQAMERQCQ SVAAGAADPG TRSALRKSRR GPRSRSSQYR GVTFYRRTGR  120
WESHIWDCGK QVYLGGFDTA QAAARAYDQA AIKFRGVTAD INFTLHDYRD DIEKMNNFSK  180
EEFVQVLRRQ GAGFIRGSSR FRGVTQHKCG KWEARISQLM GKKYVYLGLY ETETEAAQVY  240
DKAAIKCFGK EAVTNFDPQA YELQRQRESA ACDGELDLEL SLGFACGEKG GGDPTAVADV  300
AFNTSAAGKL RTSLTLKLPE EEEAIAGYLP NRSIRTTRSP IRGAFGHHQA DDDDHARVPG  360
SRSTLHMIQM GQIGVGSSGG AAAETHMRRC WMEPGGGCNN WLPPYADYAS SAAAASSGFP  420
LELEQQLDSR CLAPQQQPAT ATVFIRRSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_15804A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810716.1	1e-138	AP2-like ethylene-responsive transcription factor TOE3 isoform X1
Swissprot	A0A0N7KMH0	1e-129	AP24_ORYSJ; APETALA2-like protein 4
TrEMBL	A0A3L6PC69	1e-139	A0A3L6PC69_PANMI; Uncharacterized protein
STRING	Si006371m	1e-130	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11821	34	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.2	5e-78	AP2 family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_15804A

Publications ? help Back to Top
Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]