PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_15897A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Nin-like

Protein Properties

Length: 243aa MW: 28589.7 Da PI: 6.929

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_15897A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.2	1.6e-28	113	163	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++++e +s+yF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl Oropetium_20150105_15897A 113 EKTLTFELVSQYFYMPITQAARELDVGLTLLKKRCRELGIPRWPHRKMKSL 163 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.007	98	183	IPR003035	RWP-RK domain
Pfam	PF02042	6.4E-22	115	163	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEAKQEDSWW PYWTNAWPDN YLLEEEALLS DLSLQSLHFQ PSSYSAITPS NVLQERICIV 60 RAECIVLRGT DELDNIFKDD VLRHWDEMEQ VDTKIDERQN GLSPLYYRED KEEKTLTFEL 120 VSQYFYMPIT QAARELDVGL TLLKKRCREL GIPRWPHRKM KSLQTLINNV QVLQEAGKAT 180 GEGQLRAMVE MLQQEKQLLE KRPHVQLEEK TKRLRQACFK ANYKKRRLLA LETGQASRIQ 240 KY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_15897A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003509	1e-32	AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01.
GenBank	AP003569	1e-32	AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBank	AP014962	1e-32	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	1e-32	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966836.1	1e-110	protein RKD2
Swissprot	Q9M9U9	4e-44	RKD1_ARATH; Protein RKD1
TrEMBL	A0A1E5W6J3	1e-116	A0A1E5W6J3_9POAL; Protein RKD1 (Fragment)
STRING	Si008273m	1e-109	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-46	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_15897A