PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16081A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 196aa    MW: 22568.2 Da    PI: 10.5342
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16081AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.16.1e-11113160451
                                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                                 +r rr ++NRe+ArrsR RK+ ++ +L+  +  L + N+++ ++l++
  Oropetium_20150105_16081A 113 ERRRRRTASNRESARRSRVRKQRQLGQLRAQAGHLRGDNRDMLDRLNR 160
                                5899***********************************999988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.4E-6110181IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.358112160IPR004827Basic-leucine zipper domain
PfamPF001701.4E-7112160IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-5114186No hitNo description
SuperFamilySSF579593.83E-8114161No hitNo description
PROSITE patternPS000360117132IPR004827Basic-leucine zipper domain
CDDcd147021.70E-11121161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDWDCPVQPA ASVVLPYQLP PVSATAFGLG AHFKTTPLSD DDHFLFPYCN GGGNLLAPPP  60
PPPHPSGDDG LHYYYQRHDG HHHQPFLDRP HHHVPHFNFK ELADDRRRLV AEERRRRRTA  120
SNRESARRSR VRKQRQLGQL RAQAGHLRGD NRDMLDRLNR AIGDWDRVAR ENARLRDERA  180
ELQRRLEVLA GRQRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113118RRRRRT
2126132RRSRVRK
3126133RRSRVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16081A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965226.15e-35basic leucine zipper 8
STRINGPavir.Db01631.1.p3e-39(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-06basic leucine-zipper 42