PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_16150A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 192aa MW: 20679.4 Da PI: 4.2604

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_16150A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.5e-06	82	103	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk F++ +L H+r+H Oropetium_20150105_16150A 82 ECPECGKFFKNDKSLFGHLRSH 103 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.03E-5	70	103	No hit	No description
PROSITE profile	PS50157	10.783	81	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0083	81	103	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.3E-4	82	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MLSGCPPGEF DGAAESDSIS GGNDQLADEY TSDGYDDGWA SLPVAEADDD GEEAAKEEEA 60 GHFLPEEKGS VGELDSGGGD VECPECGKFF KNDKSLFGHL RSHPNRGYKG VSPPPEKKKL 120 MNLSSLQDDT EDDAALPAPS LSSPNDVDGS PETARAQNTN RRRRLPLARN SLVRWMKEFK 180 LERSDRSQTM S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_16150A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Da01512.1.p	2e-19	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13916	20	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	2e-10	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_16150A