PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16247A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 175aa    MW: 19083 Da    PI: 9.1116
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16247AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.42e-08123166348
                        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 
                                pG+rF+P+ +e++  +L+ k  g+++++ ++++++++y+++P++  
  Oropetium_20150105_16247A 123 PGVRFRPKKKEII-WFLRMKYLGRRMPV-DFFRDANVYEAHPQNVT 166
                                9************.99************.99************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-9120169IPR003441NAC domain
PROSITE profilePS510059.82121174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSANFPLLQP ASTHLPQADV PPWPQVVAQA PYPISHHEAM ITAVAAPAPP AEEAGPLVAV  60
AASASPAEET VPPATVATPP RRRGRPWKNT AATGSSVCEW EKKAWMVHLE EAMAGPLADT  120
EVPGVRFRPK KKEIIWFLRM KYLGRRMPVD FFRDANVYEA HPQNVTGKFT IFVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16247A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-