PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16258A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 229aa    MW: 25405.6 Da    PI: 9.5413
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16258AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-1893147256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ ++tkeq   Le+ F++++ +s++e+ +LA++++Lt rqV vWFqNrRa+ k
  Oropetium_20150105_16258A  93 RKKLRLTKEQSALLEDTFRSHNILSHAEKHHLARRVNLTPRQVEVWFQNRRARTK 147
                                678899***********************************************98 PP
2HD-ZIP_I/II112.82.2e-3693181189
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rl+keq++lLE++F++++ L++ +K++lar+++l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l++en+rL++e 
  Oropetium_20150105_16258A  93 RKKLRLTKEQSALLEDTFRSHNILSHAEKHHLARRVNLTPRQVEVWFQNRRARTKLKQTEVDCELLKRCCKSLSDENQRLKREL 176
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLre 89 
                                 eL++
  Oropetium_20150105_16258A 177 VELQR 181
                                **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-1882148IPR009057Homeodomain-like
SuperFamilySSF466897.1E-1987150IPR009057Homeodomain-like
PROSITE profilePS5007116.84489149IPR001356Homeobox domain
SMARTSM003894.6E-1491153IPR001356Homeobox domain
CDDcd000861.22E-1493150No hitNo description
PfamPF000461.5E-1593147IPR001356Homeobox domain
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PfamPF021831.4E-8149180IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.1E-14149193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MLCSSSCMEE EDLGAWLGLG IGSGCGLRGS HGERWPSLQF PNNQEDETMR GRDHKKAAVN  60
NTTDQKGGRG KRLKAAIAID DNQDDADANG CMRKKLRLTK EQSALLEDTF RSHNILSHAE  120
KHHLARRVNL TPRQVEVWFQ NRRARTKLKQ TEVDCELLKR CCKSLSDENQ RLKRELVELQ  180
RSAAAARRHH VQFPRAADAS GTTSICPSCA KVTVTSGGET SKRSSHSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16258A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966133.12e-76homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F62e-56HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A368QXX76e-75A0A368QXX7_SETIT; Uncharacterized protein
STRINGSi007238m4e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-44homeobox from Arabidopsis thaliana