PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_16430A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 172aa MW: 18834.8 Da PI: 6.5022

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_16430A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.7	1.1e-06	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+k F++ + H+r+H Oropetium_20150105_16430A 65 YSCPVCDKYFKTEKAVHGHMRSH 87 99********************9 PP
2	zf-C2H2	12.7	0.00038	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg F ++ L H +H Oropetium_20150105_16430A 110 YVCEHCGSQFESRQALGGHRASH 132 9***************9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.8E-4	60	87	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.7E-7	64	132	No hit	No description
Pfam	PF12171	8.3E-7	65	87	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	9.3E-4	65	87	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.972	65	87	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	67	87	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.045	110	132	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	5.7E-7	110	133	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	0.001	110	134	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.136	110	137	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	112	132	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MNGATQVFFI GVAYGHLLSS VAGGSGGGDE PQHPWHPSSV HGADATPPQH KRRVASSLKS 60 EEGHYSCPVC DKYFKTEKAV HGHMRSHPDR SWRGMEEPDP TVVDERQYSY VCEHCGSQFE 120 SRQALGGHRA SHNGKMGCFW LSRQPTAVAA NEPRAVLPFD LNDPVPEQED E*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_16430A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002439063.2	8e-49	zinc finger protein ZAT3
TrEMBL	A0A446YZG5	3e-50	A0A446YZG5_TRITD; Uncharacterized protein
STRING	Pavir.J33608.1.p	4e-55	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13010	27	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	2e-12	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_16430A