PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_16599A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

YABBY

Protein Properties

Length: 102aa MW: 11501.9 Da PI: 7.421

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_16599A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	103.6	4e-32	28	98	97	168
YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 e ++ +e e+v p v++PP ++qr Psayn+fikeei+rika +P+ish++afs a+knWah+P+i Oropetium_20150105_16599A 28 DREVVEADEAENVV-FPVVNKPPVRKQRTPSAYNCFIKEEIRRIKARDPSISHKQAFSSASKNWAHLPRIQQ 98 33345566666665.6789**************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.4E-29	30	97	IPR006780	YABBY protein
SuperFamily	SSF47095	6.41E-7	44	95	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.7E-5	52	96	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MTTPFTVTVE PGVDPPPRES EDECSREDRE VVEADEAENV VFPVVNKPPV RKQRTPSAYN 60 CFIKEEIRRI KARDPSISHK QAFSSASKNW AHLPRIQQKG N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_16599A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958092.1	2e-45	protein YABBY 7
Swissprot	A2PZN8	2e-26	YAB7_ORYSJ; Protein YABBY 7
TrEMBL	A0A368Q749	2e-42	A0A368Q749_SETIT; Uncharacterized protein
STRING	Pavir.Ba00601.1.p	4e-40	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13625	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-20	YABBY family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_16599A