PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_16705A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 221aa MW: 22967.9 Da PI: 8.2129

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_16705A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.8	4.7e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C++C+vlr++C++dCvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe++r+++++sl+yeA r+ +Pv+Gavg+ Oropetium_20150105_16705A 2 SCNGCRVLRKGCSEDCVLRPCLqwiesAEAQGHATVFVAKFFGRAGLMSFLTAVPETQRPAVFQSLLYEAAGRTINPVSGAVGL 85 6*******************9999777889************************************************ PP DUF260 80 ilklqqqleqlkaelall 97 + +++++l+q+++e++l+ Oropetium_20150105_16705A 86 LGSGSWHLCQAAVETVLR 103 **********998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.297	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MSCNGCRVLR KGCSEDCVLR PCLQWIESAE AQGHATVFVA KFFGRAGLMS FLTAVPETQR 60 PAVFQSLLYE AAGRTINPVS GAVGLLGSGS WHLCQAAVET VLRGGGIRPL PELDGGGGGG 120 GGAAADDTDR RDTFAFTARR TVGCSTFSAA KRATRIAAPE RAPSCDLGLW LSPESPPTTP 180 GERRPRKRPG TPSMNSEDSV TTTSSGGGGG REPELLNLFV *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_16705A

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069813	1e-121	AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958181.1	1e-110	LOB domain-containing protein 37
Swissprot	Q9FN11	1e-76	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	K3ZWM9	1e-109	K3ZWM9_SETIT; Uncharacterized protein
STRING	Si031011m	1e-109	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	9e-61	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_16705A

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]