PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16749A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 258aa    MW: 28139.1 Da    PI: 5.3043
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16749AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000187191323
                               ETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                               C  Cg+ F ++ +L  H+r+H
  Oropetium_20150105_16749A 71 CRQCGELFGSWRSLFGHMRSH 91
                               ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2246996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
PROSITE patternPS00018097109IPR018247EF-Hand 1, calcium-binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MRSHLSASTE ADVDDEVNRE PSNFGRSTNG GVVGYGLSEN PRKTRRLSDL ADEEENDDGA  60
DGDGDGEHKA CRQCGELFGS WRSLFGHMRS HASGGRDRDE DDAVDVDEFV PVPEEAEAEE  120
VEIVKAPVLA PAPVAVLSTA PRRRRRTMRV AAPAPAPTPV LSAGFEKDQE DVALCLLMLS  180
RDARLSRSSP VKEEEAVGKE GDHKNAVAKQ ARLARNSYAY DSDEDSALLQ YGPAKIKIKS  240
RKRRSSPKIQ CQAAPKRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146RRRRRT
2239244SRKRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_16749A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182857.14e-48zinc finger protein ZAT9-like
RefseqXP_021308538.12e-48zinc finger protein 865
TrEMBLA0A3L6TCN76e-52A0A3L6TCN7_PANMI; Uncharacterized protein
STRINGTraes_2BS_ACA52BC08.19e-52(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-06C2H2-like zinc finger protein